Index

Symbols

--balance_strategy command line option --certfile asreview-lab command line option --clean-all-projects asreview-lab command line option --clean-project asreview-lab command line option --embedding asreview-lab command line option command line option --feature_extraction command line option --help asreview-lab command line option --init_seed command line option --ip asreview-lab command line option --keyfile asreview-lab command line option --model command line option --n_instances command line option --n_prior_excluded command line option --n_prior_included command line option

--no-browser asreview-lab command line option --port asreview-lab command line option --port-retries asreview-lab command line option --prior_idx command line option --query_strategy command line option --seed asreview-lab command line option command line option --state_file command line option --stop_if command line option -b command line option -e command line option -h asreview-lab command line option -m command line option -q command line option -s command line option

A

abstract (asreview.ASReviewData property) abstract_length() (in module asreview.data.statistics) Active learning model add_dataset() (asreview.ASReviewProject method) add_feature_matrix() (asreview.ASReviewProject method) add_labeling_data() (asreview.state.SQLiteState method) add_last_probabilities() (asreview.state.SQLiteState method) add_last_ranking() (asreview.state.SQLiteState method) add_note() (asreview.state.SQLiteState method) add_record_table() (asreview.state.SQLiteState method) add_review() (asreview.ASReviewProject method) AlgorithmsEntryPoint (class in asreview.entry_points) append() (asreview.datasets.BaseDataGroup method) (asreview.datasets.BenchmarkDataGroup method) (asreview.datasets.NaturePublicationDataGroup method) ASReview asreview module ASReview CLI asreview-lab command line option --certfile --clean-all-projects --clean-project --embedding --help --ip --keyfile --no-browser --port --port-retries --seed -h ASREVIEW_PATH

asreview.data module asreview.datasets module asreview.entry_points module asreview.io module asreview.models module asreview.models.balance module asreview.models.classifiers module asreview.models.feature_extraction module asreview.models.query module asreview.project module asreview.review module asreview.state module ASREVIEW_PATH asreview-lab command line option asreview_path() (in module asreview) ASReviewData (class in asreview) ASReviewProject (class in asreview) ASReviewSettings (class in asreview.settings) authors (asreview.ASReviewData property)

B

BaseBalance (class in asreview.models.balance.base) BaseDataGroup (class in asreview.datasets) BaseDataSet (class in asreview.datasets) BaseEntryPoint (class in asreview.entry_points) BaseFeatureExtraction (class in asreview.models.feature_extraction.base) BaseModel (class in asreview.models.base)

BaseQueryStrategy (class in asreview.models.query.base) BaseReview (class in asreview.review) BaseTrainClassifier (class in asreview.models.classifiers.base) BenchmarkDataGroup (class in asreview.datasets) bodies (asreview.ASReviewData property) body (asreview.io.PaperRecord property)

C

caution (asreview.io.RISWriter attribute) clean_tmp_files() (asreview.ASReviewProject method) close() (asreview.state.SQLiteState method) ClusterQuery (class in asreview.models.query) command line option --balance_strategy --embedding --feature_extraction --init_seed --model --n_instances --n_prior_excluded --n_prior_included --prior_idx --query_strategy --seed --state_file --stop_if -b -e -m -q -s dataset

config (asreview.ASReviewProject property) create() (asreview.ASReviewProject class method) CSVReader (class in asreview.io) CSVWriter (class in asreview.io)

D

Data Dataset dataset command line option DatasetManager (class in asreview.datasets) default_param (asreview.models.balance.base.BaseBalance property) (asreview.models.balance.DoubleBalance property) (asreview.models.balance.SimpleBalance property) (asreview.models.balance.TripleBalance property) (asreview.models.balance.UndersampleBalance property) (asreview.models.base.BaseModel property) (asreview.models.classifiers.base.BaseTrainClassifier property) (asreview.models.classifiers.LogisticClassifier property) (asreview.models.classifiers.LSTMBaseClassifier property) (asreview.models.classifiers.LSTMPoolClassifier property) (asreview.models.classifiers.NaiveBayesClassifier property) (asreview.models.classifiers.NN2LayerClassifier property) (asreview.models.classifiers.RandomForestClassifier property) (asreview.models.classifiers.SVMClassifier property) (asreview.models.feature_extraction.base.BaseFeatureExtraction property) (asreview.models.feature_extraction.Doc2Vec property) (asreview.models.feature_extraction.EmbeddingIdf property) (asreview.models.feature_extraction.EmbeddingLSTM property) (asreview.models.feature_extraction.SBERT property) (asreview.models.feature_extraction.Tfidf property) (asreview.models.query.base.BaseQueryStrategy property) (asreview.models.query.base.ProbaQueryStrategy property) (asreview.models.query.ClusterQuery property) (asreview.models.query.MaxQuery property) (asreview.models.query.MaxRandomQuery property) (asreview.models.query.MaxUncertaintyQuery property) (asreview.models.query.MixedQuery property) (asreview.models.query.RandomQuery property) (asreview.models.query.UncertaintyQuery property)

delete_record_labeling_data() (asreview.state.SQLiteState method) delete_review() (asreview.ASReviewProject method) description (asreview.datasets.BaseDataGroup property) (asreview.datasets.BenchmarkDataGroup attribute) (asreview.datasets.NaturePublicationDataGroup attribute) (asreview.entry_points.AlgorithmsEntryPoint attribute) Doc2Vec (class in asreview.models.feature_extraction) doi (asreview.ASReviewData property) DoubleBalance (class in asreview.models.balance) drop_duplicates() (asreview.ASReviewData method) duplicated() (asreview.ASReviewData method)

E

ELAS EmbeddingIdf (class in asreview.models.feature_extraction) EmbeddingLSTM (class in asreview.models.feature_extraction) ExcelReader (class in asreview.io) ExcelWriter (class in asreview.io) execute() (asreview.entry_points.AlgorithmsEntryPoint method) (asreview.entry_points.BaseEntryPoint class method) (asreview.entry_points.LABEntryPoint method) (asreview.entry_points.SimulateEntryPoint method) (asreview.entry_points.StateInspectEntryPoint method)

exist_new_labeled_records (asreview.state.SQLiteState property) Export export() (asreview.ASReviewProject method) Extension

F

feature_matrices (asreview.ASReviewProject property) final_included (asreview.ASReviewData property) find() (asreview.datasets.BaseDataGroup method) (asreview.datasets.BenchmarkDataGroup method) (asreview.datasets.DatasetManager method) (asreview.datasets.NaturePublicationDataGroup method) fit() (asreview.models.classifiers.base.BaseTrainClassifier method) (asreview.models.classifiers.LogisticClassifier method) (asreview.models.classifiers.LSTMBaseClassifier method) (asreview.models.classifiers.LSTMPoolClassifier method) (asreview.models.classifiers.NaiveBayesClassifier method) (asreview.models.classifiers.NN2LayerClassifier method) (asreview.models.classifiers.RandomForestClassifier method) (asreview.models.classifiers.SVMClassifier method) (asreview.models.feature_extraction.base.BaseFeatureExtraction method) (asreview.models.feature_extraction.Doc2Vec method) (asreview.models.feature_extraction.EmbeddingIdf method) (asreview.models.feature_extraction.EmbeddingLSTM method) (asreview.models.feature_extraction.SBERT method) (asreview.models.feature_extraction.Tfidf method) fit_transform() (asreview.models.feature_extraction.base.BaseFeatureExtraction method) (asreview.models.feature_extraction.Doc2Vec method) (asreview.models.feature_extraction.EmbeddingIdf method) (asreview.models.feature_extraction.EmbeddingLSTM method) (asreview.models.feature_extraction.SBERT method) (asreview.models.feature_extraction.Tfidf method) from_file() (asreview.ASReviewData class method) (asreview.settings.ASReviewSettings method) full_hyper_space() (asreview.models.balance.base.BaseBalance method) (asreview.models.balance.DoubleBalance method) (asreview.models.balance.SimpleBalance method) (asreview.models.balance.TripleBalance method) (asreview.models.balance.UndersampleBalance method) (asreview.models.base.BaseModel method) (asreview.models.classifiers.base.BaseTrainClassifier method) (asreview.models.classifiers.LogisticClassifier method) (asreview.models.classifiers.LSTMBaseClassifier method) (asreview.models.classifiers.LSTMPoolClassifier method) (asreview.models.classifiers.NaiveBayesClassifier method) (asreview.models.classifiers.NN2LayerClassifier method) (asreview.models.classifiers.RandomForestClassifier method) (asreview.models.classifiers.SVMClassifier method) (asreview.models.feature_extraction.base.BaseFeatureExtraction method) (asreview.models.feature_extraction.Doc2Vec method) (asreview.models.feature_extraction.EmbeddingIdf method) (asreview.models.feature_extraction.EmbeddingLSTM method) (asreview.models.feature_extraction.SBERT method) (asreview.models.feature_extraction.Tfidf method) (asreview.models.query.base.BaseQueryStrategy method) (asreview.models.query.base.ProbaQueryStrategy method) (asreview.models.query.ClusterQuery method) (asreview.models.query.MaxQuery method) (asreview.models.query.MaxRandomQuery method) (asreview.models.query.MaxUncertaintyQuery method) (asreview.models.query.MixedQuery method) (asreview.models.query.RandomQuery method) (asreview.models.query.UncertaintyQuery method)

fuzzy_find() (in module asreview.search)

G

get() (asreview.ASReviewData method) get_balance_class() (in module asreview.models.balance) get_balance_model() (in module asreview.models.balance) get_balance_strategies() (asreview.state.SQLiteState method) get_classifier() (in module asreview.models.classifiers) get_classifier_class() (in module asreview.models.classifiers) get_classifiers() (asreview.state.SQLiteState method) get_data_by_query_number() (asreview.state.SQLiteState method) get_data_by_record_id() (asreview.state.SQLiteState method) get_data_home() (in module asreview) get_dataset() (asreview.state.SQLiteState method) get_decision_changes() (asreview.state.SQLiteState method) get_embedding_matrix() (asreview.models.feature_extraction.EmbeddingLSTM method) get_feature_class() (in module asreview.models.feature_extraction) get_feature_extraction() (asreview.state.SQLiteState method) get_feature_matrix() (asreview.ASReviewProject method) get_feature_model() (in module asreview.models.feature_extraction) get_labeled() (asreview.state.SQLiteState method)

get_labeling_times() (asreview.state.SQLiteState method) get_labels() (asreview.state.SQLiteState method) get_last_probabilities() (asreview.state.SQLiteState method) get_last_ranking() (asreview.state.SQLiteState method) get_order_of_labeling() (asreview.state.SQLiteState method) get_pending() (asreview.state.SQLiteState method) get_pool() (asreview.state.SQLiteState method) get_pool_labeled_pending() (asreview.state.SQLiteState method) get_priors() (asreview.state.SQLiteState method) get_project_path() (in module asreview.project) get_query_class() (in module asreview.models.query) get_query_model() (in module asreview.models.query) get_query_strategies() (asreview.state.SQLiteState method) get_record_table() (asreview.state.SQLiteState method) get_training_sets() (asreview.state.SQLiteState method) group_id (asreview.datasets.BaseDataGroup property) (asreview.datasets.BenchmarkDataGroup attribute) (asreview.datasets.NaturePublicationDataGroup attribute) groups (asreview.datasets.DatasetManager property)

H

hash() (asreview.ASReviewData method) heading (asreview.io.PaperRecord property) headings (asreview.ASReviewData property) hyper_space() (asreview.models.balance.base.BaseBalance method) (asreview.models.balance.DoubleBalance method) (asreview.models.balance.SimpleBalance method) (asreview.models.balance.TripleBalance method) (asreview.models.balance.UndersampleBalance method) (asreview.models.base.BaseModel method) (asreview.models.classifiers.base.BaseTrainClassifier method) (asreview.models.classifiers.LogisticClassifier method) (asreview.models.classifiers.LSTMBaseClassifier method) (asreview.models.classifiers.LSTMPoolClassifier method) (asreview.models.classifiers.NaiveBayesClassifier method) (asreview.models.classifiers.NN2LayerClassifier method) (asreview.models.classifiers.RandomForestClassifier method) (asreview.models.classifiers.SVMClassifier method) (asreview.models.feature_extraction.base.BaseFeatureExtraction method) (asreview.models.feature_extraction.Doc2Vec method) (asreview.models.feature_extraction.EmbeddingIdf method) (asreview.models.feature_extraction.EmbeddingLSTM method) (asreview.models.feature_extraction.SBERT method) (asreview.models.feature_extraction.Tfidf method) (asreview.models.query.base.BaseQueryStrategy method) (asreview.models.query.base.ProbaQueryStrategy method) (asreview.models.query.ClusterQuery method) (asreview.models.query.MaxQuery method) (asreview.models.query.MaxRandomQuery method) (asreview.models.query.MaxUncertaintyQuery method) (asreview.models.query.MixedQuery method) (asreview.models.query.RandomQuery method) (asreview.models.query.UncertaintyQuery method)

I

Import included (asreview.ASReviewData property)

is_empty() (asreview.state.SQLiteState method) is_project() (in module asreview.project) is_v0_project() (in module asreview.project)

K

keywords (asreview.ASReviewData property)

L

label (asreview.io.CSVWriter attribute) (asreview.io.ExcelWriter attribute) (asreview.io.RISWriter attribute) (asreview.io.TSVWriter attribute) (asreview.models.balance.DoubleBalance attribute) (asreview.models.balance.SimpleBalance attribute) (asreview.models.balance.TripleBalance attribute) (asreview.models.balance.UndersampleBalance attribute) (asreview.models.classifiers.LogisticClassifier attribute) (asreview.models.classifiers.LSTMBaseClassifier attribute) (asreview.models.classifiers.LSTMPoolClassifier attribute) (asreview.models.classifiers.NaiveBayesClassifier attribute) (asreview.models.classifiers.NN2LayerClassifier attribute) (asreview.models.classifiers.RandomForestClassifier attribute) (asreview.models.classifiers.SVMClassifier attribute) (asreview.models.feature_extraction.Doc2Vec attribute) (asreview.models.feature_extraction.EmbeddingIdf attribute) (asreview.models.feature_extraction.EmbeddingLSTM attribute) (asreview.models.feature_extraction.SBERT attribute) (asreview.models.feature_extraction.Tfidf attribute) (asreview.models.query.ClusterQuery attribute) (asreview.models.query.MaxQuery attribute) (asreview.models.query.MaxRandomQuery attribute) (asreview.models.query.MaxUncertaintyQuery attribute) (asreview.models.query.RandomQuery attribute) (asreview.models.query.UncertaintyQuery attribute)

labels (asreview.ASReviewData property) LABEntryPoint (class in asreview.entry_points) list() (asreview.datasets.DatasetManager method) list_asreview_projects() (in module asreview.project) list_balance_strategies() (in module asreview.models.balance) list_classifiers() (in module asreview.models.classifiers) list_feature_extraction() (in module asreview.models.feature_extraction) list_query_strategies() (in module asreview.models.query) list_readers() (in module asreview) list_writers() (in module asreview) load() (asreview.ASReviewProject class method) load_data() (in module asreview) LogisticClassifier (class in asreview.models.classifiers) LSTMBaseClassifier (class in asreview.models.classifiers) LSTMPoolClassifier (class in asreview.models.classifiers)

M

mark_review_finished() (asreview.ASReviewProject method) MaxQuery (class in asreview.models.query) MaxRandomQuery (class in asreview.models.query) MaxUncertaintyQuery (class in asreview.models.query) MixedQuery (class in asreview.models.query) Model configuration model_has_trained (asreview.state.SQLiteState property) module asreview asreview.data asreview.datasets asreview.entry_points asreview.io asreview.models asreview.models.balance asreview.models.classifiers asreview.models.feature_extraction asreview.models.query asreview.project asreview.review asreview.state

N

n_duplicates() (in module asreview.data.statistics) n_irrelevant() (in module asreview.data.statistics) n_keywords() (in module asreview.data.statistics) n_missing_abstract() (in module asreview.data.statistics) n_missing_title() (in module asreview.data.statistics) n_priors (asreview.state.SQLiteState property) n_records (asreview.state.SQLiteState property) n_records() (in module asreview.data.statistics) n_records_labeled (asreview.state.SQLiteState property) n_relevant() (in module asreview.data.statistics) n_unlabeled() (in module asreview.data.statistics) NaiveBayesClassifier (class in asreview.models.classifiers) name (asreview.io.CSVWriter attribute) (asreview.io.ExcelWriter attribute) (asreview.io.RISWriter attribute) (asreview.io.TSVWriter attribute) (asreview.models.balance.base.BaseBalance attribute) (asreview.models.balance.DoubleBalance attribute) (asreview.models.balance.SimpleBalance attribute) (asreview.models.balance.TripleBalance attribute) (asreview.models.balance.UndersampleBalance attribute) (asreview.models.base.BaseModel attribute) (asreview.models.classifiers.base.BaseTrainClassifier attribute) (asreview.models.classifiers.LogisticClassifier attribute) (asreview.models.classifiers.LSTMBaseClassifier attribute) (asreview.models.classifiers.LSTMPoolClassifier attribute) (asreview.models.classifiers.NaiveBayesClassifier attribute) (asreview.models.classifiers.NN2LayerClassifier attribute) (asreview.models.classifiers.RandomForestClassifier attribute) (asreview.models.classifiers.SVMClassifier attribute) (asreview.models.feature_extraction.base.BaseFeatureExtraction attribute) (asreview.models.feature_extraction.Doc2Vec attribute) (asreview.models.feature_extraction.EmbeddingIdf attribute) (asreview.models.feature_extraction.EmbeddingLSTM attribute) (asreview.models.feature_extraction.SBERT attribute) (asreview.models.feature_extraction.Tfidf attribute) (asreview.models.query.base.BaseQueryStrategy attribute) (asreview.models.query.base.ProbaQueryStrategy attribute) (asreview.models.query.ClusterQuery attribute) (asreview.models.query.MaxQuery attribute) (asreview.models.query.MaxRandomQuery attribute) (asreview.models.query.MaxUncertaintyQuery attribute) (asreview.models.query.MixedQuery property) (asreview.models.query.RandomQuery attribute) (asreview.models.query.UncertaintyQuery attribute) (asreview.review.ReviewSimulate attribute)

NaturePublicationDataGroup (class in asreview.datasets) NN2LayerClassifier (class in asreview.models.classifiers) Note notes (asreview.ASReviewData property)

O

open_state() (in module asreview)

P

PaperRecord (class in asreview.io) param (asreview.models.balance.base.BaseBalance property) (asreview.models.balance.DoubleBalance property) (asreview.models.balance.SimpleBalance property) (asreview.models.balance.TripleBalance property) (asreview.models.balance.UndersampleBalance property) (asreview.models.base.BaseModel property) (asreview.models.classifiers.base.BaseTrainClassifier property) (asreview.models.classifiers.LogisticClassifier property) (asreview.models.classifiers.LSTMBaseClassifier property) (asreview.models.classifiers.LSTMPoolClassifier property) (asreview.models.classifiers.NaiveBayesClassifier property) (asreview.models.classifiers.NN2LayerClassifier property) (asreview.models.classifiers.RandomForestClassifier property) (asreview.models.classifiers.SVMClassifier property) (asreview.models.feature_extraction.base.BaseFeatureExtraction property) (asreview.models.feature_extraction.Doc2Vec property) (asreview.models.feature_extraction.EmbeddingIdf property) (asreview.models.feature_extraction.EmbeddingLSTM property) (asreview.models.feature_extraction.SBERT property) (asreview.models.feature_extraction.Tfidf property) (asreview.models.query.base.BaseQueryStrategy property) (asreview.models.query.base.ProbaQueryStrategy property) (asreview.models.query.ClusterQuery property) (asreview.models.query.MaxQuery property) (asreview.models.query.MaxRandomQuery property) (asreview.models.query.MaxUncertaintyQuery property) (asreview.models.query.MixedQuery property) (asreview.models.query.RandomQuery property) (asreview.models.query.UncertaintyQuery property)

predict_proba() (asreview.models.classifiers.base.BaseTrainClassifier method) (asreview.models.classifiers.LogisticClassifier method) (asreview.models.classifiers.LSTMBaseClassifier method) (asreview.models.classifiers.LSTMPoolClassifier method) (asreview.models.classifiers.NaiveBayesClassifier method) (asreview.models.classifiers.NN2LayerClassifier method) (asreview.models.classifiers.RandomForestClassifier method) (asreview.models.classifiers.SVMClassifier method) prior_data_idx (asreview.ASReviewData property) prior_labels() (asreview.ASReviewData method) ProbaQueryStrategy (class in asreview.models.query.base) Project Project file Project mode project_from_id() (in module asreview.project) Projects dashboard

Q

query() (asreview.models.query.base.BaseQueryStrategy method) (asreview.models.query.base.ProbaQueryStrategy method) (asreview.models.query.ClusterQuery method) (asreview.models.query.MaxQuery method) (asreview.models.query.MaxRandomQuery method) (asreview.models.query.MaxUncertaintyQuery method) (asreview.models.query.MixedQuery method) (asreview.models.query.RandomQuery method) (asreview.models.query.UncertaintyQuery method)

query_top_ranked() (asreview.state.SQLiteState method)

R

RandomForestClassifier (class in asreview.models.classifiers) RandomQuery (class in asreview.models.query) read_data() (asreview.io.CSVReader class method) (asreview.io.ExcelReader class method) (asreview.io.RISReader class method) read_format (asreview.io.CSVReader attribute) (asreview.io.ExcelReader attribute) (asreview.io.RISReader attribute) Record record() (asreview.ASReviewData method)

record_ids (asreview.ASReviewData property) remove_dataset() (asreview.ASReviewProject method) remove_error() (asreview.ASReviewProject method) rename() (asreview.ASReviewProject method) review() (asreview.review.BaseReview method) (asreview.review.ReviewSimulate method) Reviewing reviews (asreview.ASReviewProject property) ReviewSimulate (class in asreview.review) RISReader (class in asreview.io) RISWriter (class in asreview.io)

S

sample() (asreview.models.balance.base.BaseBalance method) (asreview.models.balance.DoubleBalance method) (asreview.models.balance.SimpleBalance method) (asreview.models.balance.TripleBalance method) (asreview.models.balance.UndersampleBalance method) SBERT (class in asreview.models.feature_extraction) Screener set_error() (asreview.ASReviewProject method)

settings (asreview.review.BaseReview property) (asreview.review.ReviewSimulate property) (asreview.state.SQLiteState property) SimpleBalance (class in asreview.models.balance) SimulateEntryPoint (class in asreview.entry_points) SQLiteState (class in asreview.state) StateInspectEntryPoint (class in asreview.entry_points) Status SVMClassifier (class in asreview.models.classifiers)

T

text (asreview.io.PaperRecord property) texts (asreview.ASReviewData property) Tfidf (class in asreview.models.feature_extraction) title (asreview.ASReviewData property) title_length() (in module asreview.data.statistics) to_dataframe() (asreview.ASReviewData method) to_dict() (asreview.settings.ASReviewSettings method) (asreview.state.SQLiteState method) to_file() (asreview.ASReviewData method)

train() (asreview.review.BaseReview method) (asreview.review.ReviewSimulate method) transform() (asreview.models.feature_extraction.base.BaseFeatureExtraction method) (asreview.models.feature_extraction.Doc2Vec method) (asreview.models.feature_extraction.EmbeddingIdf method) (asreview.models.feature_extraction.EmbeddingLSTM method) (asreview.models.feature_extraction.SBERT method) (asreview.models.feature_extraction.Tfidf method) TripleBalance (class in asreview.models.balance) TSVWriter (class in asreview.io)

U

UncertaintyQuery (class in asreview.models.query) UndersampleBalance (class in asreview.models.balance) update_config() (asreview.ASReviewProject method)

update_decision() (asreview.state.SQLiteState method) update_review() (asreview.ASReviewProject method) url (asreview.ASReviewData property) User

V

version (asreview.state.SQLiteState property)

W

write_data() (asreview.io.CSVWriter class method) (asreview.io.ExcelWriter class method) (asreview.io.RISWriter class method) (asreview.io.TSVWriter class method) write_format (asreview.io.CSVReader attribute) (asreview.io.CSVWriter attribute) (asreview.io.ExcelReader attribute) (asreview.io.ExcelWriter attribute) (asreview.io.RISReader attribute) (asreview.io.RISWriter attribute) (asreview.io.TSVWriter attribute)